Course 2016

The 4th Kyoto Course on Bioinformatics for Next Generation Sequencing with Applications in Human Genetics – March 29th-31st, 2016 Preliminary Schedule

DAY1 (March 29) : MASSIVELY-PARALLEL SEQUENCING IN HUMAN GENETICS

9:00 – 9:30 Opening remarks & course overviews Fumihiko Matsuda / Mark Lathrop

9:30 – 10:15 Practical: Basic Linux Jean Monlong

10:15 – 10:45 Coffee break

10:45 – 12:15 Lecture: Understanding NGS data analysis workflow Guillaume Bourque

12:15 – 13:30 Lunch

13:30 – 15:30 Practical: NGS data manipulation and variant calling (SNV, CNV) Robert Eveleigh / Jean Monlong

15:30 – 16:00 Coffee break

16:00 – 18:00 Practical: Annotating and prioritising variants in human disease studies Robert Eveleigh

DAY2 (March 30) : APPLICATIONS TO HUMAN GENETICS

8:30 – 9:00 Discussions with instructors Staff

9:00 – 10:00 Lecture: Analysis of RNA-seq and epigenetic data Guillaume Bourque

10:00 – 10:20 Coffee break

10:20 – 11:20 Lecture: QTL mapping from epigenomic data Liming Liang

11:20 – 12:20 Lecture: Imputation Yukinori Okada

12:20 – 13:30 Lunch

13:30 – 14:45 Lecture: Introduction to human genetics Joseph D. Terwilliger

14:45 – 15:45 Lecture: Analysis of NGS data to identify complex and Mendelian traits Suzanne Leal

15:45 – 16:05 Coffee break

16:05 – 18:05 Practical: NGS data to identify complex and Mendelian traits Suzanne Leal

DAY3 (March 31) : COMPUTATIONAL AND STATISTICAL METHODS FOR NGS DATA

8:00 – 9:30 Lecture: Human population genetics Simon Gravel

9:30 – 10:00 Coffee break

10:00 – 12:00 Practical: Human population genetics Simon Gravel

12:00 – 13:15 Lunch

13:15 – 14:45 Lecture: Heritability analyses & disease genetics Ryan Hernandez

14:45 – 15:15 Coffee break

15:15 – 17:45 Practical: Heritability analyses Ryan Hernandez

17:45 – 18:00 Course wind-up Jurg Ott