{"id":286,"date":"2022-12-20T10:47:59","date_gmt":"2022-12-20T01:47:59","guid":{"rendered":"http:\/\/w3.genome.med.kyoto-u.ac.jp\/en\/?page_id=286"},"modified":"2023-09-22T16:13:03","modified_gmt":"2023-09-22T07:13:03","slug":"course-2014-2","status":"publish","type":"page","link":"https:\/\/w3.genome.med.kyoto-u.ac.jp\/en\/course-2014-2\/","title":{"rendered":"Course 2014"},"content":{"rendered":"\n<p><big><strong>The Second Kyoto Course on Bioinformatics for Next Generation Sequencing with Applications in Human Genetics \u2013 March 10th-12th, 2014<\/strong><\/big><\/p>\n\n\n\n<p><strong><mark style=\"background-color:rgba(0, 0, 0, 0)\" class=\"has-inline-color has-liquid-dark-blue-color\">DAY1: MASSIVELY-PARALLEL SEQUENCING IN HUMAN GENETICS<\/mark><\/strong><\/p>\n\n\n\n<p>9:00 \u2013 9:30 <strong>Opening remarks &amp; Course overviews <\/strong>Fumihiko Matsuda, Mark Lathrop<br>9:30 \u2013 10:45 <strong>Lecture: Design and implementation of studies in human genetics Joseph <\/strong>D. Terwilliger<br>10:45 \u2013 11:15 <em>Coffee break<\/em><br>11:15 \u2013 12:00 <strong>Lecture: Next-generation sequencing (NGS) in human genetics <\/strong>Mark Lathrop<br>12:00 \u2013 13:00 <em>Lunch<\/em><br>13:00 \u2013 13:30 <strong>Practical: Basic Linux (optional) Staff<\/strong><br>13:30 \u2013 14:30 <strong>Lecture: Understanding NGS data analysis workflow <\/strong>Louis Letourneau<br>14:30 \u2013 15:00 <em>Coffee break<\/em><br>15:00 \u2013 17:30 <strong>Practical: NGS quality control and variant calling <\/strong>Louis Letourneau<\/p>\n\n\n\n<p><br><strong><mark style=\"background-color:rgba(0, 0, 0, 0)\" class=\"has-inline-color has-liquid-dark-blue-color\">DAY2: APPLICATIONS TO HUMAN GENETICS<\/mark><\/strong><\/p>\n\n\n\n<p>8:15 \u2013 9:00 <strong>Discussions with instructors<\/strong><br>9:00 \u2013 10:00 <strong>Lecture: NGS Variant Calling (SNV, CNV) <\/strong>Louis Letourneau<br>10:00 \u2013 11:00 <strong>Lecture: Annotating and prioritising variants in human disease studies <\/strong>Jacek Majewski<br>11:00 \u2013 11:15 <em>Coffee break<\/em><br>11:15 \u2013 13:00 <strong>Practical: Analysis of disease variants J<\/strong>acek Majewski<br>13:00 \u2013 14:00 <em>Lunch<\/em><br>14:00 \u2013 15:00 <strong>Interpreting cancer sequence data <\/strong>Richard Houlston<br>15:00 \u2013 16:00 <strong>Introduction to statistical testing <\/strong>Daniel E. Weeks<br>16:00 \u2013 16:30 <em>Coffee break<\/em><br>16:30 \u2013 18:00 <strong>Practical: Introduction to statistical testing in human genetics <\/strong>Daniel E. Weeks<\/p>\n\n\n\n<p><br><strong><mark style=\"background-color:rgba(0, 0, 0, 0)\" class=\"has-inline-color has-liquid-dark-blue-color\">DAY3: STATISTICS FOR NGS DATA<\/mark><\/strong><\/p>\n\n\n\n<p>8:00 \u2013 8:30 <strong>Discussions with instructors<\/strong><br>8:30 \u2013 9:45 <strong>Practical: Pseudomarker for combined linkage and association analysis Joseph <\/strong>D. Terwilliger<br>9:45 \u2013 10:00 <em>Coffee break<\/em><br>10:00 \u2013 11:00 <strong>Lecture: Statistical testing with NGS data<\/strong> Suzanne M. Leal<br>11:00 \u2013 12:00 <strong>Practical: Statistical testing with NGS data <\/strong>Suzanne M. Leal<br>12:00 \u2013 13:00 <em>Lunch<\/em><br>13:00 \u2013 13:45 <strong>Lecture: Computer methods for predicting gene effects and detecting disease variants <\/strong>Pak-Chung Sham<br>13:45 \u2013 14:30 <strong>Practical: Computer methods for predicting gene effects and detecting disease variants <\/strong>Pak-Chung Sham<br>14:30 \u2013 15:30 <strong>Lecture: Multi-marker and linear mixed model approaches to mapping disease<br>and quantitative trait loci <\/strong>Peter Carbonetto<br>15:30 \u2013 16:00 <em>Coffee break<\/em><br>16:00 \u2013 17:00 <strong>Practical: Multi-marker and linear mixed model approaches to mapping disease<br>and quantitative trait loci <\/strong>Peter Carbonetto<br>17:00 \u2013 17:45 <strong>Course wind-up: Genes and environment <\/strong>Jurg Ott<\/p>\n","protected":false},"excerpt":{"rendered":"<p>The Second Kyoto Course on Bioinformatics for Next Generation Sequencing with Applications in Human Genetics \u2013 March 10th-12th, 2014 DAY1: MASSIVELY-PARALLEL SEQUENCING IN HUMAN GENETICS 9:00 \u2013 9:30 Opening remarks &amp; Course overviews Fumihiko Matsuda, Mark Lathrop9:30 \u2013 10:45 Lecture: Design and implementation of studies in human genetics Joseph D. Terwilliger10:45 \u2013 11:15 Coffee break11:15&#8230;<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"tags":[],"class_list":["post-286","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/w3.genome.med.kyoto-u.ac.jp\/en\/wp-json\/wp\/v2\/pages\/286","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/w3.genome.med.kyoto-u.ac.jp\/en\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/w3.genome.med.kyoto-u.ac.jp\/en\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/w3.genome.med.kyoto-u.ac.jp\/en\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/w3.genome.med.kyoto-u.ac.jp\/en\/wp-json\/wp\/v2\/comments?post=286"}],"version-history":[{"count":4,"href":"https:\/\/w3.genome.med.kyoto-u.ac.jp\/en\/wp-json\/wp\/v2\/pages\/286\/revisions"}],"predecessor-version":[{"id":775,"href":"https:\/\/w3.genome.med.kyoto-u.ac.jp\/en\/wp-json\/wp\/v2\/pages\/286\/revisions\/775"}],"wp:attachment":[{"href":"https:\/\/w3.genome.med.kyoto-u.ac.jp\/en\/wp-json\/wp\/v2\/media?parent=286"}],"wp:term":[{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/w3.genome.med.kyoto-u.ac.jp\/en\/wp-json\/wp\/v2\/tags?post=286"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}