{"id":277,"date":"2022-12-20T10:44:42","date_gmt":"2022-12-20T01:44:42","guid":{"rendered":"http:\/\/w3.genome.med.kyoto-u.ac.jp\/en\/?page_id=277"},"modified":"2023-09-22T10:02:58","modified_gmt":"2023-09-22T01:02:58","slug":"course-2015-2","status":"publish","type":"page","link":"https:\/\/w3.genome.med.kyoto-u.ac.jp\/en\/course-2015-2\/","title":{"rendered":"Course 2015"},"content":{"rendered":"\n

The Third Kyoto Course on Bioinformatics for Next Generation Sequencing with Applications in Human Genetics \u2013 March 16th-18th, 2015<\/big><\/strong><\/p>\n\n\n\n

<\/p>\n\n\n\n

DAY1: MASSIVELY-PARALLEL SEQUENCING IN HUMAN GENETICS<\/mark><\/strong><\/p>\n\n\n\n

9:00 \u2013 9:30 Opening remarks & course overviews <\/strong> Fumihiko Matsuda<\/p>\n\n\n\n

9:30 \u2013 10:45 Lecture: Introduction to human genetics <\/strong> Joseph D. Terwilliger<\/p>\n\n\n\n

10:45 \u2013 11:15 Coffee break<\/em><\/p>\n\n\n\n

11:15 \u2013 12:00 Lecture: Next-generation sequencing (NGS) in human genetics<\/strong> Mark Lathrop<\/p>\n\n\n\n

12:00 \u2013 13:00 Lunch<\/em><\/p>\n\n\n\n

13:00 \u2013 13:30 Practical: Basic Linux <\/strong> Daniel E. Weeks<\/p>\n\n\n\n

13:30 \u2013 14:30 Lecture: Understanding NGS data analysis workflow <\/strong> Guillaume Bourque<\/p>\n\n\n\n

14:30 \u2013 15:00 Coffee break<\/em><\/p>\n\n\n\n

15:00 \u2013 17:30 Practical: NGS data manipulation and variant calling (SNV, CNV) <\/strong> Mathieu Bourgey<\/p>\n\n\n\n

<\/p>\n\n\n\n

DAY2: APPLICATIONS TO HUMAN GENETICS<\/strong><\/mark><\/p>\n\n\n\n

8:00 \u2013 8:30 Discussions with instructors <\/strong> Staff<\/p>\n\n\n\n

8:30 \u2013 9:30 Lecture: Analysis of RNA-seq and epigenetic data <\/strong> Guillaume Bourque<\/p>\n\n\n\n

9:30 \u2013 10:30 Lecture: Annotating and prioritising variants in human disease studies <\/strong> Jacek Majewski<\/p>\n\n\n\n

10:30 \u2013 11:00 Coffee break<\/em><\/p>\n\n\n\n

11:00 \u2013 12:00 Practical: Analysis of disease variants <\/strong> Jacek Majewski<\/p>\n\n\n\n

12:00 \u2013 13:00 Lunch<\/em><\/p>\n\n\n\n

13:00 \u2013 14:00 Lecture: Target sequencing analysis of HLA loci <\/strong> Wanling Yang<\/p>\n\n\n\n

14:00 \u2013 15:00 Lecture: Novel family-control analysis to prioritize sequence variants in familial cardiomyopathy<\/strong><\/p>\n\n\n\n

Atsuko Imai<\/p>\n\n\n\n

15:00 \u2013 16:00 Lecture: Introduction to statistical testing with NGS data (gene-based rare variant tests)<\/strong><\/p>\n\n\n\n

Daniel E. Weeks<\/p>\n\n\n\n

16:00 \u2013 16:30 Coffee break<\/em><\/p>\n\n\n\n

16:30 \u2013 18:00 Practical: Statistical testing with NGS data (gene-based rare variant tests)<\/strong><\/p>\n\n\n\n

Daniel E. Weeks<\/p>\n\n\n\n

DAY3: COMPUTATIONAL AND STATISTICAL METHODS FOR NGS DATA<\/mark><\/strong><\/p>\n\n\n\n

8:00 \u2013 8:30 Discussions with instructors <\/strong> Staff<\/p>\n\n\n\n

8:30 \u2013 10:00 Lecture: Poisson processes and Poisson distribution for NGS data<\/strong> Ryo Yamada<\/p>\n\n\n\n

10:00 \u2013 10:30 Coffee break<\/em><\/p>\n\n\n\n

10:30 \u2013 12:00 Practical: Poisson processes and Poisson distribution for NGS data <\/strong> Ryo Yamada<\/p>\n\n\n\n

12:00 \u2013 13:00 Lunch<\/em><\/p>\n\n\n\n

13:00 \u2013 14:30 Lecture: Computational methods for predicting functional effect of sequence variants<\/strong><\/p>\n\n\n\n

Shamil Sunyaev<\/p>\n\n\n\n

14:30 \u2013 15:30 Lecture: QTL mapping from epigenomic data <\/strong> Liming Liang<\/p>\n\n\n\n

15:30 \u2013 16:00 Coffee break<\/em><\/p>\n\n\n\n

16:00 \u2013 17:00 Practical: QTL mapping from epigenomic data<\/strong> Liming Liang<\/p>\n\n\n\n

17:00 \u2013 17:30 Lecture: Homozygosity mapping <\/strong> Jurg Ott<\/p>\n\n\n\n

17:30 \u2013 17:45 Course wind-up <\/strong> Jurg Ott<\/p>\n","protected":false},"excerpt":{"rendered":"

The Third Kyoto Course on Bioinformatics for Next Generation Sequencing with Applications in Human Genetics \u2013 March 16th-18th, 2015 DAY1: MASSIVELY-PARALLEL SEQUENCING IN HUMAN GENETICS 9:00 \u2013 9:30 Opening remarks & course overviews Fumihiko Matsuda 9:30 \u2013 10:45 Lecture: Introduction to human genetics Joseph D. Terwilliger 10:45 \u2013 11:15 Coffee break 11:15 \u2013 12:00 Lecture:…<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"tags":[],"class_list":["post-277","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/w3.genome.med.kyoto-u.ac.jp\/en\/wp-json\/wp\/v2\/pages\/277","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/w3.genome.med.kyoto-u.ac.jp\/en\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/w3.genome.med.kyoto-u.ac.jp\/en\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/w3.genome.med.kyoto-u.ac.jp\/en\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/w3.genome.med.kyoto-u.ac.jp\/en\/wp-json\/wp\/v2\/comments?post=277"}],"version-history":[{"count":3,"href":"https:\/\/w3.genome.med.kyoto-u.ac.jp\/en\/wp-json\/wp\/v2\/pages\/277\/revisions"}],"predecessor-version":[{"id":731,"href":"https:\/\/w3.genome.med.kyoto-u.ac.jp\/en\/wp-json\/wp\/v2\/pages\/277\/revisions\/731"}],"wp:attachment":[{"href":"https:\/\/w3.genome.med.kyoto-u.ac.jp\/en\/wp-json\/wp\/v2\/media?parent=277"}],"wp:term":[{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/w3.genome.med.kyoto-u.ac.jp\/en\/wp-json\/wp\/v2\/tags?post=277"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}