{"id":268,"date":"2022-12-20T10:40:29","date_gmt":"2022-12-20T01:40:29","guid":{"rendered":"http:\/\/w3.genome.med.kyoto-u.ac.jp\/en\/?page_id=268"},"modified":"2023-09-22T10:07:18","modified_gmt":"2023-09-22T01:07:18","slug":"course-2016-2","status":"publish","type":"page","link":"https:\/\/w3.genome.med.kyoto-u.ac.jp\/en\/course-2016-2\/","title":{"rendered":"Course 2016"},"content":{"rendered":"\n

The 4th Kyoto Course on Bioinformatics for Next Generation Sequencing with Applications in Human Genetics \u2013 March 29th-31st, 2016 Preliminary Schedule<\/big><\/strong><\/p>\n\n\n\n

DAY1 (March 29) : MASSIVELY-PARALLEL SEQUENCING IN HUMAN GENETICS<\/mark><\/strong><\/p>\n\n\n\n

9:00 \u2013 9:30 Opening remarks & course overviews <\/strong> Fumihiko Matsuda \/ Mark Lathrop<\/p>\n\n\n\n

9:30 \u2013 10:15 Practical: Basic Linux <\/strong> Jean Monlong<\/p>\n\n\n\n

10:15 \u2013 10:45 <\/em><\/strong>Coffee break<\/em><\/p>\n\n\n\n

10:45 \u2013 12:15 Lecture: Understanding NGS data analysis workflow <\/strong> Guillaume Bourque<\/p>\n\n\n\n

12:15 \u2013 13:30 Lunch<\/em><\/p>\n\n\n\n

13:30 \u2013 15:30 Practical: NGS data manipulation and variant calling (SNV, CNV) <\/strong> Robert Eveleigh \/ Jean Monlong<\/p>\n\n\n\n

15:30 \u2013 16:00 Coffee break<\/em><\/p>\n\n\n\n

16:00 \u2013 18:00 Practical: Annotating and prioritising variants in human disease studies<\/strong> Robert Eveleigh<\/p>\n\n\n\n

DAY2 (March 30) : APPLICATIONS TO HUMAN GENETICS<\/mark><\/strong><\/p>\n\n\n\n

8:30 \u2013 9:00 Discussions with instructors <\/strong> Staff<\/p>\n\n\n\n

9:00 \u2013 10:00 Lecture: Analysis of RNA-seq and epigenetic data <\/strong> Guillaume Bourque<\/p>\n\n\n\n

10:00 \u2013 10:20 Coffee break<\/em><\/p>\n\n\n\n

10:20 \u2013 11:20 Lecture: QTL mapping from epigenomic data <\/strong> Liming Liang<\/p>\n\n\n\n

11:20 \u2013 12:20 Lecture: Imputation <\/strong> Yukinori Okada<\/p>\n\n\n\n

12:20 \u2013 13:30 Lunch<\/em><\/p>\n\n\n\n

13:30 \u2013 14:45 Lecture: Introduction to human genetics <\/strong> Joseph D. Terwilliger<\/p>\n\n\n\n

14:45 \u2013 15:45 Lecture: Analysis of NGS data to identify complex and Mendelian traits <\/strong> Suzanne Leal<\/p>\n\n\n\n

15:45 \u2013 16:05 Coffee break<\/em><\/p>\n\n\n\n

16:05 \u2013 18:05 Practical: NGS data to identify complex and Mendelian traits <\/strong> Suzanne Leal<\/p>\n\n\n\n

DAY3 (March 31) : COMPUTATIONAL AND STATISTICAL METHODS FOR NGS DATA<\/mark><\/strong><\/p>\n\n\n\n

8:00 \u2013 9:30 Lecture: Human population genetics <\/strong> Simon Gravel<\/p>\n\n\n\n

9:30 \u2013 10:00 Coffee break<\/em><\/p>\n\n\n\n

10:00 \u2013 12:00 Practical: Human population genetics <\/strong> Simon Gravel<\/p>\n\n\n\n

12:00 \u2013 13:15 Lunch<\/em><\/p>\n\n\n\n

13:15 \u2013 14:45 Lecture: Heritability analyses & disease genetics <\/strong> Ryan Hernandez<\/p>\n\n\n\n

14:45 \u2013 15:15 Coffee break<\/em><\/p>\n\n\n\n

15:15 \u2013 17:45 Practical: Heritability analyses <\/strong> Ryan Hernandez<\/p>\n\n\n\n

17:45 \u2013 18:00 Course wind-up <\/strong> Jurg Ott<\/p>\n","protected":false},"excerpt":{"rendered":"

The 4th Kyoto Course on Bioinformatics for Next Generation Sequencing with Applications in Human Genetics \u2013 March 29th-31st, 2016 Preliminary Schedule DAY1 (March 29) : MASSIVELY-PARALLEL SEQUENCING IN HUMAN GENETICS 9:00 \u2013 9:30 Opening remarks & course overviews Fumihiko Matsuda \/ Mark Lathrop 9:30 \u2013 10:15 Practical: Basic Linux Jean Monlong 10:15 \u2013 10:45 Coffee…<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"tags":[],"class_list":["post-268","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/w3.genome.med.kyoto-u.ac.jp\/en\/wp-json\/wp\/v2\/pages\/268","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/w3.genome.med.kyoto-u.ac.jp\/en\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/w3.genome.med.kyoto-u.ac.jp\/en\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/w3.genome.med.kyoto-u.ac.jp\/en\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/w3.genome.med.kyoto-u.ac.jp\/en\/wp-json\/wp\/v2\/comments?post=268"}],"version-history":[{"count":3,"href":"https:\/\/w3.genome.med.kyoto-u.ac.jp\/en\/wp-json\/wp\/v2\/pages\/268\/revisions"}],"predecessor-version":[{"id":733,"href":"https:\/\/w3.genome.med.kyoto-u.ac.jp\/en\/wp-json\/wp\/v2\/pages\/268\/revisions\/733"}],"wp:attachment":[{"href":"https:\/\/w3.genome.med.kyoto-u.ac.jp\/en\/wp-json\/wp\/v2\/media?parent=268"}],"wp:term":[{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/w3.genome.med.kyoto-u.ac.jp\/en\/wp-json\/wp\/v2\/tags?post=268"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}